医学分子生物学杂志 ›› 2024, Vol. 21 ›› Issue (4): 374-379.doi: 10.3870/j.issn.1672-8009.2024.04.013

• 论著 • 上一篇    下一篇

基于生物信息学方法分析肝癌和糖尿病共有的关键基因和信号通路 #br#

  

  1. 1汉中市三二一医院医学检验科 陕西省汉中市, 723000 2延安大学附属医院检验科 陕西省延安市, 716000
  • 出版日期:2024-07-31 发布日期:2024-09-09
  • 基金资助:
    中国高校产学研创新基金-华通国康医学科研专项 2023 ( No. 2023T056), 陕西省自然科学基础研究计划 ( No. 2024JC-YBQN-0983)

Bioinformatics Analysis of Common Key Genes and Signal Pathways in Liver Cancer and Diabetes #br#

  1. 1Department of Laboratory, Hanzhong 3201th Hospital, Hanzhong, Shaanxi, 723000, China  2Department of Laboratory, Affiliated Hospital of Yanan University, Yanan, Shaanxi, 716000, China
  • Online:2024-07-31 Published:2024-09-09

摘要: 目的 利用生物信息学方法探究肝癌和糖尿病共有的基因特征和致病机制方法 GEO ( Gene Expression Omnibus) 数据库中下载肝癌数据集 (GSE121248) 和糖尿病数据集 (GSE29221), 通过 R语言包进行差异分析, Venn 图获取共有的差异表达基因 (differentially expressed genes, DEGs)。 DEGs 进行 GO (gene ontology) KEGG ( kyoto encyclopedia of genes and genomes) 富集分析, Cytoscape 软件获取PPI (protein protein interaction) 网络中的关键模块和核心基因NetworkAnalyst 数据库中进行基因转录因子和 mi-RNA 的网络互作分析。 DGIdb 数据库用于基因与药物的互作分析通过 Kaplan-Meier Plotter 数据库分析核心基因的预后价值结果 共筛选出 39 DEGs, 这些 DEGs 在细胞外基质胰岛素样生长因子受体信号通路的正调控肝素结合和 P53 通路等信号通路中显著富集共筛选出 6 个核心基因 ( THBS1、DCNBGNCOL14A1、 LUMPCOLC), 其中 2 个核心基因 (DCNTHBS1) 可与相关肿瘤治疗药物互作, 1 个核心基因 (DCN) 与肝癌患者预后相关结论 DCN 可能是治疗糖尿病并发肝癌的潜在药物靶点

关键词:

肝癌, 糖尿病, 生物信息学, 关键基因, 信号通路, 预后

Abstract: Objective To explore the gene features and pathogenic mechanisms shared byhepatocellular carcinoma and diabetes mellitus using bioinformatics methods. Methods The hepatocellular carcinoma dataset (GSE121248) and diabetes mellitus dataset ( GSE29221) were downloaded from the GEO (Gene Expression Omnibus) database, and were analyzed by R. Venn diagrams were used to obtain the shared differentially expressed genes (DEGs). GO (gene ontology) and KEGG ( kyoto encyclopedia of genes and genomes) enrichment analyses were performed on DEGs, and Cytoscape software was used to obtain the key modules and core genes in the proteinprotein interaction (PPI) network. The network interaction analyses of genes, transcription factors and mi-RNAs were performed in NetworkAnalyst database. DGIdb database was used for gene-drug interaction analysis. The prognostic values of the core genes were analyzed by Kaplan-Meier Plotterdatabase. Results A total of 39 DEGs were screened out, which were significantly enriched inpathways such as extracellular matrix, positive regulation of insulin-like growth factor receptor signaling pathway, heparin binding, and P53 signaling pathway. 6 core genes ( THBS1, DCN, BGN, COL14 A1, LUM and PCOLC) were screened out, of which two core genes (DCN and THBS1) could interacted with some tumor therapeutic agents and one core gene (DCN) was associated with the prognosis of hepatocellular carcinoma patients. Conclusion DCN may be a potentialdrug therapeutic target for patients with both diabetes and hepatocellular carcinoma.

Key words: liver cancer, diabetes, bioinformatics, key gene, signal pathway, prognosis

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