医学分子生物学杂志 ›› 2024, Vol. 21 ›› Issue (4): 366-373.doi: 10.3870/j.issn.1672-8009.2024.04.012

• 论著 • 上一篇    下一篇

胃癌预后标志物 circRNA-miRNA-mRNA ceRNA 网络生物信息学分析 #br#

  

  1. 南京医科大学附属无锡人民医院1普外科,2手术室 江苏省无锡市, 214000
  • 出版日期:2024-07-31 发布日期:2024-09-09

Bioinformatics Analysis of circRNA-miRNA-mRNA ceRNA Network for Prognosis in Gastric Cancer #br#

  1. 1Department of Genaral Surgery,2Operating Room, the Affiliated Wuxi Peoples Hospital of Nanjing Medical University, Wuxi, Jiangsu, 214000, China
  • Online:2024-07-31 Published:2024-09-09

摘要: 目的 构建胃癌 (gastric cancer, GC) 中与预后相关的 circRNA-miRNA-mRNA 竞争性内源 RNA(competing endogenous RNA, ceRNA) 调控网络, 探究诊治靶点方法 GEO、 TCGA 数据库中获得 GC中差异表达的 circRNAs ( circular RNA, circRNA) 及相关 miRNAs ( microRNA, miRNA)、 mRNAs, 利用Cytoscape 构建 circRNA-miRNA-mRNA ceRNA 网络, 关注差异表达 mRNAs 功能, 确定枢纽基因, 最终通过Kaplan-Meier 生存分析确定其预后价值结果 ceRNA 网络由差异表达的 2 circRNAs、 5 miRNAs 349 mRNAs 组成功能富集分析提示差异 mRNAs 肌肉系统发育”、 “金属离子跨膜转运蛋白活性”、“突触膜钙信号通路等方面和通路显著富集构建了包含125 个节点和165 条边的 PPI 网络, 并鉴定出10 个枢纽基因, 生存分析提示低 ADAR1D PTGFR 表达可能导致 GC 患者预后不良结论 成功构建了与GC 预后相关的 circRNA-miRNA-mRNA ceRNA 调控网络, 确定了 hsa_ circ_ 0001190/ hsa-miR-7-5p/ ADRA1D hsa _ circ_ 0036287/ hsa-miR-3127-5p/ PTGFR 两个在 GC 中具有潜在预后价值的轴, GC 的靶向诊治与研究提供新的依据

关键词: 环状 RNA, 胃癌, 竞争性内源 RNA, mRNA, 预后

Abstract: Objective To construct a prognostic circRNA-miRNA-mRNA ceRNA network ingastric cancer ( GC) and explore the diagnostic and therapeutic targets. Methods Differentiallyexpressed circular RNAs (circRNA), related microRNAs (miRNA) and mRNAs in GC were obtained from GEO and TCGA databases. Cytoscape was utilized to construct the circRNA-miRNA-mRNA ceRNA network, to understand the biological functions of differentially expressed mRNAs and identifying the hub genes. Kaplan-Meier survival analysis was used to verify the prognostic values. Results The ceRNA network was consisted of 2 circRNAs, 5 miRNAs and 349 mRNAs thatwere differentially expressed. Functional enrichment analysis revealed that mRNAs were significantly enriched in terms and pathways like “ muscle system process”, “ metal ion transmembrane transporter activity”, “synaptic membrane” and “calcium signaling pathway” . A PPI network containing 125 nodes and 165 edges was constructed and 10 hub genes were identified. Survival analysis implied that low ADAR1D or PTGFR expression levels might lead to poor prognosis of GC patients. Conclusion The circRNA-miRNA-mRNA ceRNA network involved in prognosis of GC issuccessfully constructed. Two axes, the hsa _ circ _ 0001190 / hsa-miR-7-5p / ADRA1D and the hsa_ circ_ 0036287 / hsa-miR-3127-5p / PTGFR, are identified with potential prognostic values in GC, providing a new target for diagnosis andtreatment of GC.

Key words: circular RNA, gastric cancer, ceRNA, mRNA, prognosis

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